N A N O P R O B E S E - N E W S
Vol. 9, No. 6 June 30, 2008
Updated: June 30, 2008
In this Issue:
|
This monthly newsletter is to inform you about techniques to improve your immunogold labeling, highlight interesting articles and novel applications of metal nanoparticles, and answer your questions. We hope you enjoy it and find it useful; as always, let us know if we can improve anything.
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
EnzMet™ for ISH, IHC, Blotting, EM...and MoreDo you want clearer, cleaner chromogenic in situ hybridization? Sharper immunohistochemistry? You can - with EnzMet™ (Enzyme Metallography), a novel metallographic peroxidase substrate, developed at Nanoprobes, which provides a new level of resolution and sensitivity with HRP staining, providing a dramatic improvement over conventional chromogenic substrates. Its advantages don't end with light microscopy: it gives spectacular results in blotting, and also provides rapid, dense, high-contrast staining in the electron microscope, providing a method for correlative labeling. It even provides improved selectivity in the detection of target DNA sequences using conductive array biochips. Full instructions are now available online. |
In Situ Hybridization (ISH) and Immunohistochemistry (IHC)
EnzMet™ has many advantages compared with both fluorescent and conventional organic chromogenic staining:
Examples of the staining obtained using this reagent, and a comparison with DAB, are shown below. When used for in situ hybridization, EnzMet™ readily visualizes endogenous copies of single genes with almost no background. Unlike FISH, it allows accurate gene quantitation in the brightfield light microscope. This is more accessible to many users; furthermore, the signal is not subject to fading or bleaching, as many fluorophores are. In immunohistochemistry (IHC), it produces a highly resolved black signal with virtually no diffusion, allowing clear visualization of the underlying tissue morphology; this and its black color make it easy to differentiate from other stains.
| Upper left: EnzMet™ detection of the amplification of individual HER2 gene copies in paraffin-embedded human invasive breast carcinoma biopsy; normal, non-amplified cells contain two copies of the HER2 gene, while the infiltrating HER2-amplified carcinoma cells show multiple copies (original magnification X 400. Image courtesy of Dr. R. R. Tubbs, Cleveland Clinic Foundation). Upper right: EnzMet™ staining of epithelial cytokeratins in paraffin-embedded human prostate adenocarcinoma using a secondary immunoperoxidase method (original magnification x 400). Lower left: Imunoperoxidase staining of epithelial cytokeratins in paraffin-embedded human bladder tumor: secondary immunoperoxidase with DAB; and Lower right: secondary immunoperoxidase method using EnzMet™ (original magnification x 400). |
EnzMet™ for use in automated ISH and IHC slide staining and diagnostic applications is being commercialized by Ventana Medical Systems, under the product name SISH (Silver In Situ Hybridization. However, for manual staining procedures, you can purchase EnzMet™ for ISH and IHC from Nanoprobes. Full instructions for use are also now online.
References:
EnzMet™ is also one of the cleanest and most sensitive detection reagents we have tried for Western blots. A comparison between conventional DAB development and EnzMet™ development on a Western blot is shown below:
| Comparison of Western blot detection of his-tagged Fusion Protein using HRP conjugates developed with DAB (Panel A) and EnzMet™ (Panel B). After transfer, membranes were incubated with anti-His-Tag (6xHis) monoclonal antibody, followed by BSA blocking, and then exposed to Horseradish peroxidase (HRP)-conjugated secondary antibody. The His-tagged fusion proteins were then visualized by DAB detection (Panel A) or EnzMet detection (Panel B). Lanes 1 and 4: 0.1 µg of 34 kDa his-tagged ATF-1. Lanes 2 and 5: 0.1 µg of 68 kDa his-tagged YY1. Lanes 3 and 6: 0.1 µg BSA and 0.1 µg ovalbumin. |
In most cases, the EnzMet™ protocol using EnzMet™ for Blots below may be substituted for conventional DAB development without further modification of the protocol. However, because of its greater sensitivity, greater dilutions of either primary antibody or secondary probes may be required to achieve the optimum combination of sensitivity and clarity. A five-fold to ten-fold additional dilution has been found to give good results in immunohistochemical experiments and is likely to be appropriate here also.
Protocol:
You can purchase EnzMet™ for blotting from Nanoprobes; instructions and protocols for use are also now available online.
Reference:
But we don't wish to leave out electron microscopists. The granular IHC staining shows that the reaction product essentially does not diffuse, providing the high resolution necessary for electron microscopy. Here, it has the great advantage that the small size of the enzymatic probe and in situ metal deposition can afford improved access to interior or to hindered antigens, and provide denser labeling than larger colloidal gold probes, while the high contrast means the deposited silver is readily visualized. At the Microscopy and Microanalysis 2006 meeting, we presented the results of a detailed study, conducted in collaboration with the Department of Biological Sciences at Rutgers University, in which EnzMet™ was used to localize polar tube proteins in Microsporida at the light and electron microscopic level. Microsporida are parasitic organisms that are important opportunistic pathogens in AIDS and other immune compromised patients. They are responsible for chronic diarrhea, malabsorption syndromes, myositis, and disseminating infections demonstrated in all tissues of the body. Approximately a dozen different microsporidia infect humans: all form a diagnostic spore containing a coiled polar filament surrounding the single nucleus or paired abutted nuclei (diplokaryon) and its associated cytoplasmic organelles, the sporoplasm; upon germination, the polar filament is everted to become a tubule, through which the spore contents travel to become the infective sporoplasm.
Cultured RK-13 cells infected with E. hellem microsporidia were grown on slides, immunofixed (for electron microscopy), and stored in PBS buffer. These were incubated with primary antibody (anti polar tube – PTP-55 [6], 1:100) for one hour. A universal detection system incorporating a biotinylated secondary antibody and polymerized peroxidase-streptavidin detection (I-View, Ventana Medical Systems) was applied. After washing with PBS-0.01% Tween-20, distilled water, and 0.02 M sodium citrate buffer at pH 3.8, specimens were developed with a modified formulation of the enzyme metallographic reagent (Nanoprobes, Incorporated), washed again with 0.02 M sodium citrate buffer at pH 3.8, rinsed with deionized water, and coverslipped. After light microscope examination, areas of interest were marked on the back of the slides. The cover glasses were removed, and the slides rinsed in distilled water, dehydrated through a series of ethanol solutions (50% - 100%) and infiltrated with Araldite 502 resin (EMS, PA) overnight. Marked areas were covered with BEEM capsules filled with resin, and embedded at 60°C for 24 hours. Thin sections were cut, placed on copper grids, and stained with uranyl acetate and lead citrate. Samples were examined using a transmission electron microscope. Some results are shown below.
| Upper left: Schematic showing the mode of action of enzyme metallography. Micrographs show RK-13 cells infected with E. hellem microsporidia, stained using anti-polar tube antibody (PTP-55) and I-View universal peroxidase detection system (Ventana Medical Systems), developed with enzyme metallography. (a) Brightfield light microscopy with 40X dry objective; (b) Brightfield with 40X oil immersion objective, showing infective sporoplasm (dark arrow) and empty spore (white arrow); (c) TEM: staining with primary antibody and enzyme metallography development, showing heavily decorated polar tube, empty spore (dark arrow) and infective sporoplasm (white arrow). (d) control with primary antibody omitted, showing counterstained polar tube. |
The polar tubes were easily observed with brightfield optics, and background was very clean: almost no non-specific deposits were observed on the cells and surrounding matrix. The enzyme metallography visualization is more sensitive, with lower background and higher resolution than DAB staining, and for the first time, brings sufficient staining intensity for diagnostic identification to light microscopy, providing a robust and practical method for diagnosis in less developed regions of the world where microsporida are a major public health concern and where electron microscopy, the usual diagnostic tool, is not available. At the same time, the electron microscopy results show that the method also provides superior research tool for ultrastructural examination. These results were obtained using our EnzMet™ HRP Detection Kit for Research Applications (catalog # 6010); we plan to introduce a new formulation optimized for electron microscopy in future.
Reference:
In addition to its use for staining and blotting, EnzMet™ may also be used for highly specific electrical detection using conductive array biochips: enzyme-labeled DNA probes were developed with EnzMet™ to form conductive bridges after binding to targets patterned to connect two electrodes. If you wish to try this procedure, you should use our third EnzMet™ product, EnzMet™ HRP Detection Kit for Research Applications (catalog # 6010). Instructions are available online.
Reference:
More information:
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
| Enhancement of Nanogold® by GoldEnhance™: mechanism. Final particle size is controlled by enhancement time. |
Gold enhancement has important advantages over silver enhancement for several applications:
| Left: Pre-embedding immunolabeling using Nanogold-Fab’ and GoldEnhance™ EM, showing uniform enlarged particles. Center and right: DAB vs. GoldEnhance-Nanogold: Formalin-fixed serial paraffin sections of cervical carcinoma, in situ hybridized for HPV-16/18 using a biotinylated probe (bar = 10?m). (center) DAB-peroxidase; (right) Nanogold-streptavidin with GoldEnhance™ (courtesy of G. W. Hacker, Medical Research Coordination Center, University of Salzburg). |
References:
If you have been using Nanogold®: for detection on nitrocellulose membrane blots (immunodot blots or Westerns) and experienced less than ideal detection, we have developed an optimized detection procedure that maintains the already very high sensitivity, but combines it with a greatly reduced background and enhanced signal clarity. For the best results, we recommend using a procedure that incorporates the following components:
Suggested procedure:
Reagents and Equipment:
Procedure:
Antigen Application:
Blocking:
Binding of Nanogold antibody conjugate:
Autometallographic Detection:
More information:
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Wild-type and DdrA(1–160) were overproduced in E. coli using p12713, with an additional stop point inserted for the truncated protein. This plasmid was constructed by cloning a NdeI/BamHI DNA fragment, corresponding to the D. deserti ddrA sequence (generated by PCR with the FV41/FV43 primers and D. deserti genomic DNA as template) between the NdeI/BamHI sites of pET-TEVDdrA(1–160) was carried out by elution of the cellular extract from Ni-NTA beads by 0.15 M Imidazole, 1 M NaCl and 0.05 M Tris–HCl, pH 8.0. The purest fractions were pooled and concentrated with a large cutoff (100 kDa) centricon, then after mass spectroscopy, a final gel filtration chromatography step was added to the purification protocol using a Superdex 200 HiLoad 16/60 column pre-equilibrated in 0.15 M NaCl, 0.02 M Tris–HCl, pH 7.5): a single peak was observed. The secondary structures and linker region predictions of D. deserti DdrA were performed with the Jpred and DPL programs. SDS-PAGE gel analysis of the elution peak obtained with the truncated protein after the gel filtration indicated one single major band at 20 kDa and several minor bands corresponding to higher molecular weight species of DdrA(1–160).
For electron microscopy, different fractions of the peak eluted from the gel filtration column were collected and observed separately with negative staining, a method used for high-resolution electron microscopy to define the edges of particulate or suspended specimens with low contrast. The sample was applied to the clean side of a thin carbon film on carbon–mica interface, and the carbon film with the absorbed sample was floated on a drop of Nano-W solution. A 400-mesh copper grid was put on top of the floating carbon film, then the whole was turned upside down and used to catch a second layer of carbon film floating on another drop of NanoW. In this way, an entirely and uniformly stained sample was trapped between two thin layers of carbon. The grids were observed under low-dose conditions with a tungsten filament at 100 kV.
Our negative stains, NanoVan (vanadate) and Nano-W (tungstate) are building a solid volume of publications, are ideal for this type of work because they have a highly amorphous structure and fine grain which provides for maximum resolution in specimen imaging, since crystallization can obscure features of interest. In addition, NanoVan is ideal for use with smaller gold labels such as Nanogold®: because the stain is less electron-dense than other negative stains such as uranyl acetate or lead citrate, contrast between the gold particles and their environment is preserved. It is very fine-grained and highly amorphous, and has been used for a number of high-resolution STEM and TEM studies of virus and protein ultrastructure. Nano-W gives a more dense stain, and is more suited to use with larger gold labels. NanoVan and Nano-W are based on organic salts of vanadium and tungsten respectively.
Advantages of these reagents:
| Schematic showing how negative stains work (left) and high-resolution electron micrographs obtained using a scanning transmission electron microscope. (a) Tobacco Mosaic Virus (TMV) negatively stained with 2 % uranyl acetate; (b) TMV stained with 1 % methylamine vanadate (NanoVan); both samples imaged with a dose of 104 eI/nm2. Original full width 128 nm for each image. (c) Side view of groEL (large arrow) labeled with 1.4 nm gold cluster (Nanogold, small arrow) imaged in methylamine vanadate. Note clear visibility of subunit structure and gold cluster. Full width 128 nm. Specimen kindly provided by A. Horwich, Yale University. |
Visual inspection indicated that all the fractions contained a small ring-shaped species, together with some larger species. The most distal fraction seemed the most homogeneous, and analysis was focused on this particular fraction. Images were recorded on film at a nominal magnification of 40 000 x, and the negatives digitized on a Zeiss SCAI scanner at a pixel size of 7 ?m, corresponding to 1.75 Å/pixel at the specimen level. Image processing was performed with IMAGIC and EMAN software on 15,166 subframes containing individual DdrA(1–160) particles selected interactively from micrographs at different defoci to better fill the zeroes of the contrast transfer function. Multivariate statistical analysis (MSA) and classification of the aligned data set allowed separation of the big species from the small ring-shaped species, and demonstrated clearly the 3-fold rotational symmetry of the large DdrA(1–160) oligomer. The characteristic class averages of the large oligomer were then used as a set of references for multi-reference alignment (MRA) followed by MSA, classification, and refinement to an estimated resolution of the reconstruction of about 23 Å according to the 0.5 threshold. A fit of the crystal structure of the homologous-pairing domain of human Rad52 protein into the electron microscopy reconstruction was done with the UROX software; Only the N-terminal domain residues ranged from 25 to 178 of Rad52 were considered for the fitting. The last C-terminal residues from 179 to 209 were excluded because they include a loop region in the crystal structure. The buried accessible surface was estimated by AREAIMOL from the CCP4 package.
Two types of assemblies could be detected immediately from the negative stain images: smaller ring-shaped species of 7.5 nm in diameter, and larger ones about 13.5 nm in size. The latter were randomly oriented on the grid, and some of their projections showed that the largest objects were composed of rings of the same dimensions as the small particles. Therefore, it was inferred that the small ring-shaped species constituted the building blocks of the large DdrA(1–160) complex. Although it is not functional in vivo, the truncated DdrA protein keeps its DNA binding ability at the wild-type level. DdrA(1–160) has a complex three-dimensional structure, based on a heptameric ring that can self-associate to form a larger molecular weight assembly. The authors conclude that this complex architecture may play a role in the substrate specificity, and favors an efficient DNA repair. In the cell, the large assemblies could correspond to a transient state occurring during the DNA repair to put together the repair machinery, including several DNA single strands and other unknown cellular partners. A complex pattern of self-association has also described for the wild type and truncated forms of Rad52, and it was suggested that this is important to promote DNA end-joining. This type of large, complex organization with conformational flexibility would function to optimize the interactions between these different molecular elements.
Reference:
More information:
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
| Upper: Size comparison of Nanogold-Fab' with conventional 5 nm colloidal gold-IgG probe, showing overall probe size and distance of gold from target. lower left: Scanning transmission electron micrograph of Nanogold-labeled Fab', showing attachment of the Nanogold at the hinge region of the Fab' (image width 86 nm). lower right: Nanogold®-Fab' goat anti-rabbit IgG labeling the K+ channel Kv2.1 subunit in rat brain, followed by HQ Silver (Catalog # 2012) enhancement. Note high density and specificity of immunostaining, even elucidating subunit localization to cytoplasmic side of cell membrane and outer stacks of the Golgi; axons and terminals are clearly negative. Work done by J. Du, J.-H. Tao-Cheng, P. Zerfas, and C. J. McBain, NIH. See Neuroscience, 84, 37-48 (1998). Bar = 1 micron. |
Male Sprague–Dawley rats were subjected to a chronic cocaine exposure cocaine administration regimen routinely used to induce behavioral sensitization to psychostimulants in rats. For perfusion, all animals were deeply anesthetized with a cocktail of ketamine (60–100 mg/kg, i.p.) and dormitor (0.1 mg/kg, i.p.), then transcardially perfused with cold oxygenated Ringer’s solution followed by a fixative containing 4% paraformaldehyde and 0.1% glutaraldehyde in 0.1 M phosphate buffer, pH 7.4. Brains were removed, post-fixed in 4% paraformaldehyde for 24 h, cut into 60-µm-thick sections using a vibrating microtome and stored in phosphate-buffered saline (PBS; 0.01 M, pH 7.4) at 4°C until used. Before immunocytochemical reactions, all sections were treated with 1% sodium borohydride solution for 20 minutes, then washed with phosphate-buffered saline (PBS). sections were incubated for 30 min in PBS containing 5% dry milk at RT and then rinsed in TBS-gelatin buffer (0.02 M and pH 7.6).
For electron microscopic labeling, sections were then incubated with primary antibody solutions with 1% dry milk in TBS-gelatin buffer for 24 hours at room temperature (RT), rinsed in TBS-gelatin, then treated for two hours at RT with secondary goat Nanogold-IgG anti-rabbit IgG diluted 1:100 in 1% dry milk in TBS-gelatin. Sections were then rinsed in TBS-gelatin and 2% sodium acetate buffer, after which the Nanogold particles were silver intensified to 30–50 nm using HQ silver for approximately 10 minutes. The tissue was then rinsed in phosphate buffer (0.1 M, pH 7.4) and treated with 0.5% OsO4 for 10 minutes, then returned to PB and dehydrated with increasing concentrations of ethanol. At 70% ETOH, 1% uranyl acetate was added to the solution for 10 minutes to increase the contrast of the tissue in the electron microscope. Following dehydration, sections were treated with propylene oxide and embedded in epoxy resin for 12 hours, mounted onto slides and placed in a 60°C oven for 48 hours. Separate samples of the nucleus accumbens core and medial shell were cut out of the larger sections, mounted onto resin blocks and cut into 60-nm sections using an ultramicrotome; the 60-nm sections were collected on Pioloform-coated copper grids, stained with lead citrate for 5 minutes to enhance tissue contrast, then examined on electron microscope. Electron micrographs were taken and saved with a CCD camera.
After a single cocaine injection (30 mg/kg) and 45 minute withdrawal, there was a significant decrease in the proportion of plasma membrane–bound mGluR1a in accumbens shell dendrites. Similarly, the proportion of plasma membrane– bound mGluR1a was decreased in large dendrites of accumbens core neurons following chronic cocaine exposure (i.e. 1-week treatment followed by 3-week withdrawal). However, neither acute nor chronic cocaine treatments induced significant change in the localization of mGluR5 in accumbens core and shell, which is in contrast with the significant reduction of plasma membrane–bound mGluR1a and mGluR5 induced by local intraaccumbens administration of the group I mGluR agonist, (RS)-3,5-dihydroxyphenylglycine (DHPG). In conclusion, these findings demonstrate that cocaine-induced glutamate imbalance has modest effects on the trafficking of group I mGluRs in the nucleus accumbens. These results provide valuable information on the neuroadaptive mechanisms of accumbens group I mGluRs in response to cocaine administration.
Reference:
More information:
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Please note that Nanoprobes will be closed on Thursday, July 3 and Friday, July 4 in observance of the United States Independence Day holiday. Correspondence will be answered and pending orders received during the holiday will be shipped on Monday, July 7 or as soon as possible thereafter.
More information:
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Reference:
Reference:
Gautier and Bürgi shed light on the role of thiol ligands in determining the structure and exchange kinetics of small thiol-stabilized gold nanoparticles containing a few tens of gold atoms, in their recent paper in the Journal of the American Chemical Society. The thiolate-for-thiolate ligand exchange was performed on well-defined gold nanoparticles under an inert atmosphere, without any modification of the core size. This reaction is faster than the well-known core etching process. Unexpectedly, if a chiral thiol is exchanged for its opposite enantiomer, the optical activity in the metal-based electronic transitions is reversed, although the form of the circular dichroism (CD) spectrum remains largely unchanged. The extent of inversion corresponds to the overall enantiomeric excess of the chiral ligand in the system. This shows that the chiral arrangement of metal atoms on the metal particle (surface) cannot withstand the driving force imposed by the ligand of opposite absolute configuration. If the incoming thiol has a different structure, the electronic transitions in the metal core are slightly modified whereas the absorption onset remains unchanged. These results emphasize the influence of the thiols on the structure of the gold nanoparticles, and can be used to give insight into the ligand exchange pathways.
Reference:
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
To unsubscribe from this newsletter, simply reply to the e-mail version, and replace the subject line with "unsubscribe." Alternatively, visit our web site newsletter page at http://www.nanoprobes.com/Newsletter.html#unsubscribe.